Information for 7-GGTCATATTA (Motif 10)

A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A
Reverse Opposite:
C G A T C G T A C G T A A C G T C T G A A C G T C T A G G T C A T G A C G T A C
p-value:1e-12
log p-value:-2.856e+01
Information Content per bp:1.845
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif98.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets45.6 +/- 28.9bp
Average Position of motif in Background52.1 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGTCATATTA-
GKVTCADRTTWC
 A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGTCATATTA
AGGTCA-----
 A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGTCATATTA
-GTCATN---
 A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A
A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGTCATATTA
AGRGGTCA-----
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGTCATATTA---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGTCATATTA
TRAGGTCA-----
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGTCATATTA
ATCAAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGTCATATTA-
NNTNNCAATATTAG
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGTCATATTA-
NNTNNCAATATTAG
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGTCATATTA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C G T C A A G C T C G T A C G A T C G A T C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T