Information for 2-GGAGTCRCGYTCC (Motif 4)

A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C T A G A G T C C T A G A G C T A C T G C G T A A T G C A C G T A G T C G T A C
p-value:1e-12
log p-value:-2.989e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.7 +/- 21.7bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GGAGTCRCGYTCC
NTNNNAGGAGTCTCNTN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGAGTCRCGYTCC----
---GTCACGCTCNCTGA
 A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGAGTCRCGYTCC
--AGTCACGC---
 A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GGAGTCRCGYTCC-
--------GCTCCG
 A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGAGTCRCGYTCC--
-GTGCCACGCGACTG
 A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGAGTCRCGYTCC
GGCGAGGGGTCAAGGGC-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGAGTCRCGYTCC
-GKVTCADRTTWC
 A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

JUN(var.2)/MA0489.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTCRCGYTCC
ATGAGTCATNTNNT
 A C G T A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
T G C A A C G T A C T G C G T A T A C G C G A T A G T C C G T A A G C T G A T C G A C T G A T C G A T C G A C T

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGTCRCGYTCC
NTNNNGGGGTCANGNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T

HES5/MA0821.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGAGTCRCGYTCC-
--CGGCACGTGCCA
 A C T G A C T G C G T A A T C G A C G T A G T C C T G A A G T C A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A