Information for 1-ACGGCAAGAC (Motif 2)

G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C
Reverse Opposite:
A C T G A C G T G T A C A C G T A C G T A C T G A T G C A T G C A T C G A C G T
p-value:1e-13
log p-value:-3.003e+01
Information Content per bp:1.862
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.4 +/- 27.9bp
Average Position of motif in Background49.2 +/- 37.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACGGCAAGAC-
AAGGCAAGTGT
 G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

RUNX2/MA0511.2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACGGCAAGAC
AAACCGCAA---
 A C G T A C G T G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACGGCAAGAC-
-CGTCTAGACA
 G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C A C G T
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

RUNX3/MA0684.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ACGGCAAGAC
AAACCGCAAA--
 A C G T A C G T G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACGGCAAGAC
ACGTCA----
 G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ACGGCAAGAC--
ATTTACGACAAATAGC
 A C G T A C G T A C G T A C G T G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACGGCAAGAC--
----CCAGACAG
 G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACGGCAAGAC
ACCGGAAG--
 G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:ACGGCAAGAC----
----CCAGACRSVB
 G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACGGCAAGAC-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T G T C A A T G C A T C G A T C G A G T C C G T A C G T A A C T G G T C A G T A C A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A