Information for 2-GCCTGGAAGAAGG (Motif 4)

T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
Reverse Opposite:
A G T C G A T C A G C T G A C T A G T C C A G T G A C T A T G C A G T C G T C A C T A G A T C G A G T C
p-value:1e-13
log p-value:-3.003e+01
Information Content per bp:1.769
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif70.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets41.4 +/- 26.6bp
Average Position of motif in Background47.4 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGAAGAAGG------
NNCCTGNAAAAAAAAAAAAA
 A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGAAGAAGG------
NNCCTGNAAAAAAAAAAAAA
 A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGAAGAAGG
AGGCCTAG-------
 A C G T A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGAAGAAGG
AGGCCTNG-------
 A C G T A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGAAGAAGG
CTGTCTGG-------
 A C G T A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCCTGGAAGAAGG
GGTCTGGCAT----
 A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGAAGAAGG
TTCCNGGAAG----
 A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCCTGGAAGAAGG
---TGGAAAA---
 T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGAAGAAGG
TWGTCTGV-------
 A C G T A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCCTGGAAGAAGG
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T T A C G A T G C A G T C A C G T C T A G A T C G C G T A G C T A A C T G C T G A C T G A C A T G T C A G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T