Information for 2-ACCAMGCAGSCAWGGC (Motif 3)

C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A G C T A C T G A T C G A G T C A C G T A C T G A T G C A C G T A C G T A C T G A C T G A C G T
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.909
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.8 +/- 23.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACCAMGCAGSCAWGGC
-SCAGYCADGCATGAC
 C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACCAMGCAGSCAWGGC-
-GCAGCCAAGCGTGACN
 C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ACCAMGCAGSCAWGGC
--CACGCA--------
 C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------ACCAMGCAGSCAWGGC
AAATGGACCAATCAG-------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--ACCAMGCAGSCAWGGC
GGACCACCCACG------
 A C G T A C G T C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:ACCAMGCAGSCAWGGC
-----BCAGACWA---
 C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:ACCAMGCAGSCAWGGC--
----NGTTGCCATGGCAA
 C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:ACCAMGCAGSCAWGGC-
------AAGGCAAGTGT
 C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---ACCAMGCAGSCAWGGC
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

GLI2/MA0734.1/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---ACCAMGCAGSCAWGGC
GCGACCACACTG-------
 A C G T A C G T A C G T C G T A A G T C A G T C C G T A T G A C A T C G A G T C C G T A A C T G A T G C A G T C C T G A C G A T A C T G A C T G A G T C
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T