Information for 10-GACKGTMACT (Motif 26)

A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C A G T C G T A A G T C G T C A A C T G C G A T A G T C
p-value:1e-5
log p-value:-1.243e+01
Information Content per bp:1.846
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif161.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets61.8 +/- 26.3bp
Average Position of motif in Background49.3 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GACKGTMACT--
GSCTGTCACTCA
 A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GACKGTMACT-
TGTCTGDCACCT
 A C G T A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GACKGTMACT---
-ACTTTCACTTTC
 A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GACKGTMACT---
-NCTGTCAATCAN
 A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GACKGTMACT-
CTGTCTGTCACCT
 A C G T A C G T A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GACKGTMACT--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PRDM1/MA0508.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GACKGTMACT----
TCACTTTCACTTTCN
 A C G T A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T A C G T A C G T
G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GACKGTMACT------
-NNNGTAACTANGNNA
 A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACKGTMACT
VGCTGWCAVB
 A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GACKGTMACT---
---GTTAACTAGN
 A C T G C G T A A G T C A C G T A C T G A C G T G T C A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T