Information for 17-GAGCCCATCAAAC (Motif 34)

A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T C T A G C G T A A C G T C T A G A C T G A C T G A G T C A C G T G T A C
p-value:1e-7
log p-value:-1.752e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 24.7bp
Average Position of motif in Background17.4 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GAGCCCATCAAAC
---CCAATAAAAC
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGCCCATCAAAC
--NGCAATTAAA-
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGCCCATCAAAC
--GGCCATTAAC-
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GAGCCCATCAAAC
------ATTAAA-
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GAGCCCATCAAAC
---CCAATAAAAA
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGCCCATCAAAC-
--GGCCATAAATCA
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGCCCATCAAAC
--NCYAATAAAA-
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGCCCATCAAAC
--CCYMATAAAA-
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

PH0014.1_Cphx/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGCCCATCAAAC
ATGATCGAATCAAA-
 A C G T A C G T A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C
C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGCCCATCAAAC----
ACGGCCATAAAATTAAT
 A C T G C G T A A C T G A G T C G T A C A G T C C G T A A C G T A G T C C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T