Information for 12-AABAAAAHTTCHAAGT (Motif 15)

C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G C T C A G T A C T G C G T A C G T A C G T A A G C T A C G T A C G T A C G T T A G C A C G T A C G T
p-value:1e-11
log p-value:-2.616e+01
Information Content per bp:1.805
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.4 +/- 11.8bp
Average Position of motif in Background83.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AABAAAAHTTCHAAGT
AATGCAATAAAATTTAT----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AABAAAAHTTCHAAGT
AACCCAATAAAATTCG-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AABAAAAHTTCHAAGT
CTACCAATAAAATTCT-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AABAAAAHTTCHAAGT
AAACAAACATTC-----
 A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AABAAAAHTTCHAAGT
CCAATAAAAA--------
 A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AABAAAAHTTCHAAGT
CCAATAAAAA--------
 A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AABAAAAHTTCHAAGT
----AAAGATCAAAGG
 C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AABAAAAHTTCHAAGT
CCAATAAAAC--------
 A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AABAAAAHTTCHAAGT
AAAGGTAATAAAATTT------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AABAAAAHTTCHAAGT
GTCATAAAAN--------
 A C G T A C G T C G T A C G T A A C T G C G T A C G T A C G T A T C G A G A C T C G A T A C G T G T A C G C T A C T G A C G T A A C T G A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T