Information for 4-GAGRGGCTCARGG (Motif 11)

A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G
Reverse Opposite:
A G T C G T A C A G T C C G A T A C T G G T C A A C T G A G T C A G T C A G C T A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.616e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.0 +/- 19.8bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAGRGGCTCARGG---
--GGGGCCCAAGGGGG
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAGRGGCTCARGG---
----AGGTCAAGGTCA
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGRGGCTCARGG
---NGGATTAN--
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGRGGCTCARGG
AAGAGGATTAG--
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGRGGCTCARGG---
----AGGTCAAGGTCA
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGRGGCTCARGG
CTTGAGTGGCT-----
 A C G T A C G T A C G T A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGRGGCTCARGG-----
---AAGTTCAAGGTCAGC
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGRGGCTCARGG
TTGAGTGSTT-----
 A C G T A C G T A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAGRGGCTCARGG---
----GCCTCAGGGCAT
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GAGRGGCTCARGG---
------NTCAAGGTCA
 A C T G C G T A A C T G C T G A A C T G A C T G G T A C A C G T A G T C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A