Information for 4-GCCGCGGCTTTTTGCC (Motif 3)

A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C
Reverse Opposite:
A C T G C T A G A T G C C G T A C G T A C G T A C G T A G T C A A C T G A G T C A G T C A C T G G T A C A T C G C T A G T A G C
p-value:1e-9
log p-value:-2.212e+01
Information Content per bp:1.784
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.6 +/- 22.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC--
--CTTGGCANNNTGCCAA
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C A C G T A C G T
A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC
-----GGGGATTTCC-
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C
A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC-
---TTGGCATGGTGCCA
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C A C G T
A C G T A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC------
------GNNATTTGTCGTAANN
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC
-----GGGAATTTCC-
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C
A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

SPI1/MA0080.4/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GCCGCGGCTTTTTGCC
TACTTCCGCTTTTT---
 A C G T A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C
G C A T C T G A T A G C C G A T C A G T A T G C G A T C A C T G A T G C G C A T C G A T G C A T G A C T A G C T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC
----NGGGGATTTCCC
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C
A C G T A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GCCGCGGCTTTTTGCC
GGGGCCGAGGCCTG-----
 A C G T A C G T A C G T A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC-----
------WCATTTTGKCCTCYT
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC-
--CACGGCAGTTGGTNN
 A C T G A G T C A T G C C A T G G T A C A C T G A C T G T A G C C A G T C G A T A C G T A C G T A C G T A T C G G A T C A G T C A C G T
A C G T A C G T T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G