Information for 15-AAAGCHCAAAGCCCAA (Motif 30)

G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
Reverse Opposite:
C G A T C A G T C A T G A C T G T A C G A G T C C G A T C A G T C G A T C T A G C T G A A T C G T G A C C G A T A G C T C A G T
p-value:1e-8
log p-value:-1.925e+01
Information Content per bp:1.692
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.8 +/- 24.0bp
Average Position of motif in Background58.4 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAGCHCAAAGCCCAA
CANAGNNCAAAGTCCA-
 A C G T G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA
AGAGTCCAAAGTCCA-
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA-
AAAGGTCAAAGGTCAAC
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA
AAAGATCAAAGG----
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA-
-GGGGTCAAAGTCCAAT
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA---
---GGCAAAAGTCCAATAA
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA
AAAGATCAAAGGGTT-
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA
AAAGATCAAAGGAA--
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA
--ACATCAAAGG----
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAAGCHCAAAGCCCAA
AAACCGCAAA------
 G C T A T C G A C G T A A C T G A T G C G A C T A G T C C G T A G C T A C G T A C T A G A G T C G T A C G T A C G C T A C G T A
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T