Information for 2-CCTATATTACCTA (Motif 3)

A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A
Reverse Opposite:
A C G T G C T A A C T G A C T G A C G T C G T A C G T A A G C T G T C A C G A T C G T A C T A G A C T G
p-value:1e-16
log p-value:-3.844e+01
Information Content per bp:1.822
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.3 +/- 26.5bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTATATTACCTA-
NAATTTTATTACCTNN
 A C G T A C G T A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTATATTACCTA
TNAATTTTATTACCTN
 A C G T A C G T A C G T A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTATATTACCTA-
NAATTTTATTACCNNN
 A C G T A C G T A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

NFIL3/MA0025.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTATATTACCTA-
---ANGTTACATAA
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A A C G T
A C G T A C G T A C G T C G T A A G C T T C A G A G C T A C G T C G T A A G T C C T G A C G A T G T C A C G T A

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTATATTACCTA
-TTTTATGGCTN-
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTATATTACCTA
-TTTTATTGC---
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTATATTACCTA
NTTTTATTACN--
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T

TEF/MA0843.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCTATATTACCTA---
----TATTACGTAACA
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C G A G C A T C G A T C T G A G A T C C T A G A G C T G C T A C T G A A G T C T G C A

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCTATATTACCTA-
-----ATTGCATAA
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTATATTACCTA
NTTTTATGAC---
 A G T C A G T C C G A T C G T A A C G T C T G A C G A T A C G T T C G A A G T C A G T C C G A T C G T A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T