Information for 13-KAATGGAGATYCC (Motif 18)

A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
Reverse Opposite:
A C T G A T C G T C A G G T C A G A C T G T A C G A C T A T G C T A G C C G T A A C G T A G C T G T A C
p-value:1e-9
log p-value:-2.269e+01
Information Content per bp:1.742
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.6 +/- 30.5bp
Average Position of motif in Background71.0 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:KAATGGAGATYCC
---GGGAATTTCC
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:KAATGGAGATYCC
---GGGGATTTCC
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:KAATGGAGATYCC
TAATGGCGGNC--
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:KAATGGAGATYCC-
--NGGGGATTTCCC
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C A C G T
A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:KAATGGAGATYCC
---GGGGATTTCC
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:KAATGGAGATYCC-
----GGAAATTCCC
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:KAATGGAGATYCC---
----GGGGATTCCCCC
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---KAATGGAGATYCC
CCTTAATNGNTTTT--
 A C G T A C G T A C G T A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--KAATGGAGATYCC
GKTAATGR-------
 A C G T A C G T A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:KAATGGAGATYCC---
------ATTTTCCATT
 A C T G T C G A C G T A A C G T A C T G A T C G C T G A A C T G C G T A A C G T A G T C A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T