Information for 1-CCYGGATGGCCCCTTG (Motif 1)

A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G
Reverse Opposite:
A G T C G T C A C G T A A C T G C A T G A T C G A C T G A G T C A G T C C T G A C A G T A T G C A T G C C T A G C T A G A C T G
p-value:1e-16
log p-value:-3.860e+01
Information Content per bp:1.725
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.9 +/- 27.0bp
Average Position of motif in Background59.0 +/- 39.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCYGGATGGCCCCTTG
CCCCCTTGGGCCCC---
 A C G T A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCYGGATGGCCCCTTG------
-----ATAACCACTTGAAAATT
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCYGGATGGCCCCTTG--
-NNNNTTGACCCCTNNNN
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T
A C G T C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CCYGGATGGCCCCTTG--
--------ACCACTTGAA
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCYGGATGGCCCCTTG--
-TGTCGTGACCCCTTAAT
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T
A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CCYGGATGGCCCCTTG-----
-----TAAGCCACTTGAAATT
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CCYGGATGGCCCCTTG--
------CGCCCCCTGACA
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

Mycn/MA0104.3/Jaspar

Match Rank:8
Score:0.52
Offset:8
Orientation:forward strand
Alignment:CCYGGATGGCCCCTTG
--------GCCACGTG
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G

USF2/MA0526.1/Jaspar

Match Rank:9
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CCYGGATGGCCCCTTG--
-------GGTCACATGAC
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CCYGGATGGCCCCTTG
------TGACCYCT--
 A G T C A G T C G A T C A T C G A T C G G C T A G A C T C T A G C T A G G T A C A T G C G T A C G T A C G C A T A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T