Information for 4-CTKGGTCAGT (Motif 7)

A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
Reverse Opposite:
C T G A A T G C A C G T A C T G T C G A G A T C T A G C G T C A C G T A A T C G
p-value:1e-10
log p-value:-2.465e+01
Information Content per bp:1.754
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.95%
Number of Background Sequences with motif794.4
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets48.9 +/- 27.3bp
Average Position of motif in Background49.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTKGGTCAGT
AAYTAGGTCA--
 A C G T A C G T A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CTKGGTCAGT
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTKGGTCAGT
--AGGTCA--
 A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTKGGTCAGT--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTKGGTCAGT
ATCAAGGTCA--
 A C G T A C G T A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTKGGTCAGT------
GTAGGTCACTGGGTCA
 A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

POL002.1_INR/Jaspar

Match Rank:7
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CTKGGTCAGT---
-----TCAGTCTT
 A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTKGGTCAGT
TGCTGAGTCA--
 A C G T A C G T A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTKGGTCAGT--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

FOS::JUN/MA0099.2/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTKGGTCAGT
-TGAGTCA--
 A T G C A C G T C A G T A T C G C T A G A G C T A G T C C G T A A T C G G A C T
A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T