Information for 2-TTCAAATTCTCTA (Motif 3)

A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
Reverse Opposite:
A C G T C T G A A C T G T C G A A C T G G T C A C G T A A C G T C G A T A C G T C T A G C G T A C G T A
p-value:1e-12
log p-value:-2.847e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.5 +/- 19.6bp
Average Position of motif in Background77.2 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTCAAATTCTCTA
NATTCAAAT------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TTCAAATTCTCTA
CGGTTTCAAA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTCAAATTCTCTA
--CACATTCCAT-
 A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTCAAATTCTCTA-
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

TEAD1/MA0090.2/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTCAAATTCTCTA
--CACATTCCAT-
 A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TTCAAATTCTCTA
ACTTTCACTTTC----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TTCAAATTCTCTA
TTGTATGCAAATTAGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TTCAAATTCTCTA
TTGTATGCAAATTAGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTCAAATTCTCTA
AGTTTCAGTTTC----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TTCAAATTCTCTA
ATATGCAAATNNN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T A C G T A G T C A C G T G T A C A G C T C G T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T