Information for 3-RRWYGMTSAKGCCTTT (Motif 4)

C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C T G A C T G A G T C G T C A A C G T A T G C C G T A C A G T A G T C C T G A C G A T A G C T A G C T
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.822
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.8 +/- 22.7bp
Average Position of motif in Background64.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:RRWYGMTSAKGCCTTT
------CNAGGCCT--
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:RRWYGMTSAKGCCTTT
------CTAGGCCT--
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RRWYGMTSAKGCCTTT-
--NNGGCCACGCCTTTN
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RRWYGMTSAKGCCTTT
-GGGGCCGAGGCCTG-
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T

JUN/MA0488.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RRWYGMTSAKGCCTTT
--AAGATGATGTCAT-
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.52
Offset:11
Orientation:forward strand
Alignment:RRWYGMTSAKGCCTTT---
-----------CCTTTGTT
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:RRWYGMTSAKGCCTTT--
-NTAGTTAATCCCCTTAN
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:RRWYGMTSAKGCCTTT-
AATCGTTAATCCCTTTA
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.51
Offset:11
Orientation:forward strand
Alignment:RRWYGMTSAKGCCTTT---
-----------CCWTTGTY
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:10
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:RRWYGMTSAKGCCTTT-----
---------TNCCTTTGATGT
 C T G A C T G A C G T A G A C T A C T G G T A C A C G T T A C G C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T