Information for 7-CCAAGCRTGG (Motif 18)

G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G
Reverse Opposite:
T G A C A T G C G T C A G A C T A C T G T A G C G C A T C G A T C T A G A C T G
p-value:1e-8
log p-value:-1.915e+01
Information Content per bp:1.613
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif179.4
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets42.4 +/- 27.9bp
Average Position of motif in Background50.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCRTGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCAAGCRTGG
DCTCAGCAGG-
 A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAAGCRTGG--
CACAGCAGGGGG
 G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCAAGCRTGG----
DCHCAGCAGGRGGCC
 A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGCRTGG---
TCCCAGMCRAGCCCC
 A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAAGCRTGG--
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCRTGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCRTGG--
GAGCACAGCAGGACA
 A C G T A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCAAGCRTGG-
SCAGYCADGCATGAC
 A C G T A C G T A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGCRTGG
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T G T A C G A T C G C T A C G T A A T C G G T A C C T G A C A G T A T C G A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T