p-value: | 1e-9 |
log p-value: | -2.143e+01 |
Information Content per bp: | 1.695 |
Number of Target Sequences with motif | 11.0 |
Percentage of Target Sequences with motif | 2.30% |
Number of Background Sequences with motif | 77.5 |
Percentage of Background Sequences with motif | 0.16% |
Average Position of motif in Targets | 34.3 +/- 24.1bp |
Average Position of motif in Background | 55.3 +/- 29.8bp |
Strand Bias (log2 ratio + to - strand density) | -0.3 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer
Match Rank: | 1 |
Score: | 0.64 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | CCTGAACAAAAGC ---GAACAATGGN |
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PB0071.1_Sox4_1/Jaspar
Match Rank: | 2 |
Score: | 0.63 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CCTGAACAAAAGC--- AGAAGAACAAAGGACTA |
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PB0061.1_Sox11_1/Jaspar
Match Rank: | 3 |
Score: | 0.62 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CCTGAACAAAAGC--- ATAAGAACAAAGGACTA |
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PB0121.1_Foxj3_2/Jaspar
Match Rank: | 4 |
Score: | 0.62 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----CCTGAACAAAAGC AACACCAAAACAAAGGA |
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Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer
Match Rank: | 5 |
Score: | 0.61 |
Offset: | 4 |
Orientation: | reverse strand |
Alignment: | CCTGAACAAAAGC ----RACAAWGG- |
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MF0011.1_HMG_class/Jaspar
Match Rank: | 6 |
Score: | 0.60 |
Offset: | 4 |
Orientation: | reverse strand |
Alignment: | CCTGAACAAAAGC ----AACAAT--- |
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SOX9/MA0077.1/Jaspar
Match Rank: | 7 |
Score: | 0.60 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | CCTGAACAAAAGC ---GAACAATGG- |
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PB0123.1_Foxl1_2/Jaspar
Match Rank: | 8 |
Score: | 0.59 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---CCTGAACAAAAGC ATATCAAAACAAAACA |
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PB0065.1_Sox15_1/Jaspar
Match Rank: | 9 |
Score: | 0.59 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CCTGAACAAAAGC--- TAGTGAACAATAGATTT |
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PB0183.1_Sry_2/Jaspar
Match Rank: | 10 |
Score: | 0.59 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --CCTGAACAAAAGC-- TCACGGAACAATAGGTG |
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