Information for 4-CCAWAGATGSCAA (Motif 10)

A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A
Reverse Opposite:
A C G T A C G T A C T G T A C G A T G C C G T A C G A T G T A C C G A T G C T A A C G T A C T G C T A G
p-value:1e-9
log p-value:-2.260e+01
Information Content per bp:1.771
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif36.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets41.9 +/- 16.7bp
Average Position of motif in Background54.6 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCAWAGATGSCAA
TGNCCATATATGGTCA
 A C G T A C G T A C G T A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCAWAGATGSCAA
TTCCATATATGGAA-
 A C G T A C G T A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCAWAGATGSCAA
CCATATATGGNA-
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CCAWAGATGSCAA--
-----GGTGCCAAGT
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAWAGATGSCAA
CCATATATGG---
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCAWAGATGSCAA--
------ATGCCAACC
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCAWAGATGSCAA-
------TTGCCAAG
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCAWAGATGSCAA-
-----CGTGCCAAG
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCAWAGATGSCAA
----ARNTGACA-
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A
A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCAWAGATGSCAA----
-----TATGCWAATBAV
 A G T C A G T C C G T A C G A T C G T A A C T G C G T A A C G T A T C G A T G C G T A C G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G