Information for 12-TCACAACAGGAGAGAT (Motif 25)

A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T A G T C A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C T G C G T A
p-value:1e-4
log p-value:-9.976e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.6 +/- 23.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCACAACAGGAGAGAT
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCACAACAGGAGAGAT
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCACAACAGGAGAGAT
-CACAGCAGGGGG---
 A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCACAACAGGAGAGAT
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCACAACAGGAGAGAT
ATGTCACAACAACAC----
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCACAACAGGAGAGAT
DCHCAGCAGGRGGCC-
 A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TCACAACAGGAGAGAT
------CAGGTGAGG-
 A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCACAACAGGAGAGAT
ATGCAACAGGTGG---
 A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TCACAACAGGAGAGAT
DCTCAGCAGG------
 A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TCACAACAGGAGAGAT
AACACCAAAACAAAGGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T A C G T