Information for 2-TGGTGATWACTGA (Motif 2)

A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G A C G T G C A T G T C A A C G T A G T C C G T A A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.800e+01
Information Content per bp:1.926
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 20.1bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGTGATWACTGA
TAATGATGATCACTA-
 A C G T A C G T A C G T A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGGTGATWACTGA
---TGATTGATGA
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0061.1_Hoxb6/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGATWACTGA--
NNNGTAATTACNNATA
 A C G T A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A A C G T A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGGTGATWACTGA--
---TGATTRATGGCY
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGATWACTGA---
NNNNTGAGCACTGTNNG
 A C G T A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

MEOX2/MA0706.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGGTGATWACTGA
-NTTAATTACN--
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A
A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGGTGATWACTGA-
--ATGATKGATGRC
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGTGATWACTGA
AGGTGTTAAT---
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGTGATWACTGA
-GNTAATTAGN--
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A
A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGGTGATWACTGA----
-AGTTATTAATGAGGTC
 A C G T A C T G C T A G A C G T A C T G C G T A A C G T C G A T C G T A A G T C A C G T C T A G C G T A A C G T A C G T A C G T A C G T
A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C