Information for 12-CWTRSCCCKRGAM (Motif 22)

A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A
Reverse Opposite:
A C G T A C G T A G T C A G T C G T A C C A T G A C T G A C T G A T G C G A T C C G T A C G A T A C T G
p-value:1e-7
log p-value:-1.687e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.0 +/- 25.7bp
Average Position of motif in Background42.2 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CWTRSCCCKRGAM-
NNCNTGACCCCGCTCT
 A C G T A C G T A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CWTRSCCCKRGAM
-ATGCCCTGAGGC
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CWTRSCCCKRGAM
-WTGSCCTSAGGS
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A
A C G T G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CWTRSCCCKRGAM-
--CGCCCCCTGACA
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T
A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CWTRSCCCKRGAM-
NNNNTGACCCGGCGCG
 A C G T A C G T A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CWTRSCCCKRGAM
ACATGCCCGGGCAT
 A C G T A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CWTRSCCCKRGAM-
--TCCCNNGGGACN
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T
A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CWTRSCCCKRGAM----
--NNNACCGAGAGTNNN
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CWTRSCCCKRGAM----
--GNNACCGAGAATNNN
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CWTRSCCCKRGAM-
--TGCCCCCGGGCA
 A G T C C G T A A C G T C T A G A T C G A G T C A G T C G A T C A C T G C T A G C T A G C G T A G T C A A C G T
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A