Information for 1-TTCAGSACCAAGGMCA (Motif 1)

A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A
Reverse Opposite:
C G A T C A T G A C G T A G T C A G T C G A C T A C G T A C T G C T A G A C G T A T G C A G T C C G A T A T C G C T G A T G C A
p-value:1e-17
log p-value:-3.924e+01
Information Content per bp:1.700
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.8 +/- 20.5bp
Average Position of motif in Background74.0 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA-----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTCAGSACCAAGGMCA-----
-TCAGCACCATGGACAGCTCC
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.60
Offset:8
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA--
--------CAAGGHCANV
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA--
---AAGTTCAAGGTCAGC
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA
------BTCAAGGTCA
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA
------NTCAAGGTCA
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA
--TAGGGCAAAGGTCA
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA
----AGGTCAAGGTCA
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A
A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:TTCAGSACCAAGGMCA-
-------TCAAGGTCAN
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.52
Offset:7
Orientation:forward strand
Alignment:TTCAGSACCAAGGMCA--
-------TCAAGGTCATA
 A C G T A G C T A T G C C G T A A C T G A T C G G T C A G A T C G T A C C G T A C T G A C T A G C T A G T G C A G A T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A