Information for 9-ACTAACACTCACA (Motif 14)

C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A A C T G A C G T
p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.3 +/- 17.7bp
Average Position of motif in Background19.0 +/- 3.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACTAACACTCACA-
NNNTAACAATTATAN
 A C G T C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACTAACACTCACA
NCTGTCAATCAN-
 C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ACTAACACTCACA------
RACTACAACTCCCAGVAKGC
 A C G T C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ACTAACACTCACA
--AAGCACTTAA-
 C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ACTAACACTCACA
GSCTGTCACTCA--
 A C G T C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTAACACTCACA
SCTGTCAVTCAV-
 C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ACTAACACTCACA
--MRSCACTYAA-
 C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ACTAACACTCACA
--NAACAAT----
 C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ACTAACACTCACA
AAAAATAACAAACGG-
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T

SOX21/MA0866.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:ACTAACACTCACA-----
---AACACTACCATTGTT
 C G T A A G T C A C G T C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T