Information for 5-RCAAAACATGTGT (Motif 10)

C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T
Reverse Opposite:
C T G A G A T C T C G A G T A C C G T A A C G T C T A G A G C T A G C T G A C T A C G T T A C G A G C T
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.735
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.2 +/- 20.7bp
Average Position of motif in Background49.9 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0084.1_Irx3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RCAAAACATGTGT---
NNTATTACATGTANNNT
 A C G T C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

Twist2/MA0633.1/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RCAAAACATGTGT-
----ACCATATGTT
 C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T
A C G T A C G T A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RCAAAACATGTGT---
ANTNNTACATGTANNTN
 A C G T C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RCAAAACATGTGT---
ANTATTACATGTANNNN
 A C G T C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

CLOCK/MA0819.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:RCAAAACATGTGT-
----AACACGTGTT
 C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T

BHLHE23/MA0817.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RCAAAACATGTGT--
---AAACATATGTTT
 C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T A C G T
A C G T A C G T A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

NEUROG2/MA0669.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RCAAAACATGTGT-
----AACATATGTC
 C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T
A C G T A C G T A C G T A C G T T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----RCAAAACATGTGT
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RCAAAACATGTGT---
ANTNTTACATGTATNTA
 A C G T C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

Atoh1/MA0461.2/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:RCAAAACATGTGT-
----ANCATATGTT
 C T G A A G T C C G T A C T G A C T G A T C G A G A T C C G T A A C G T A C T G A C G T C T A G A G C T A C G T
A C G T A C G T A C G T A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T