Information for 11-MCCATGTAATTTA (Motif 19)

G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A
Reverse Opposite:
A C G T G T C A C T G A G C T A C G A T A C G T C G T A G T A C G T C A C G A T A T C G A C T G A C T G
p-value:1e-8
log p-value:-2.014e+01
Information Content per bp:1.678
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.4 +/- 20.4bp
Average Position of motif in Background37.4 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MCCATGTAATTTA---
-CCTTGCAATTTTTNN
 G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A A C G T A C G T A C G T
A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:MCCATGTAATTTA
----TGTCANYT-
 G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:MCCATGTAATTTA-
--TATGCWAATBAV
 G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----MCCATGTAATTTA
AATATACATGTAATATA
 A C G T A C G T A C G T A C G T G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:MCCATGTAATTTA-
-ATATGCAAATNNN
 G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A A C G T
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0086.1_Irx5/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----MCCATGTAATTTA
ANTNNTACATGTANNTN-
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----MCCATGTAATTTA
ANTTNTACATGTANTTN-
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:MCCATGTAATTTA--
CTCATGAATATTCAT
 G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:MCCATGTAATTTA-
--WATGCAAATGAG
 G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A A C G T
A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Sox1/MA0870.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-MCCATGTAATTTA-
AACAATGNTATTGTT
 A C G T G T A C G T A C A T G C C G T A A C G T A C T G G C A T G T C A C G T A C A G T A G C T A C G T G T C A A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T