Information for 10-CCAGACAGTACTGCTG (Motif 15)

G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
Reverse Opposite:
A G T C C G T A A C T G A T G C C T G A A C T G A C G T C G T A A G T C A C G T A C T G A C G T A G T C A C G T A C T G C T A G
p-value:1e-9
log p-value:-2.098e+01
Information Content per bp:1.920
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 32.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACAGTACTGCTG
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGTACTGCTG
CCAGACAG--------
 G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGTACTGCTG
CCAGACRSVB------
 G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGTACTGCTG
BCAGACWA--------
 G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCAGACAGTACTGCTG
GVACAGNMTGTYCTB---
 A C G T A C G T G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACAGTACTGCTG
ATGCCAGACN---------
 A C G T A C G T A C G T G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CCAGACAGTACTGCTG-----
------TNTCCTGCTGTGNNG
 G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0141.1_Isgf3g_2/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CCAGACAGTACTGCTG
GCAAAACATTACTA---
 A C G T G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CCAGACAGTACTGCTG-----
------NNTCCTGCTGTGNNN
 G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGACAGTACTGCTG
AGGTGNCAGACAG--------
 A C G T A C G T A C G T A C G T A C G T G A T C A G T C C G T A C T A G C G T A A G T C C G T A A C T G A C G T G T C A A G T C A G C T A T C G A G T C C G A T A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T