Information for 2-AGAAATCCCC (Motif 12)

C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C T G C G T A A C G T A C G T A C G T A T G C A G C T
p-value:1e-9
log p-value:-2.302e+01
Information Content per bp:1.841
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif104.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets60.4 +/- 31.0bp
Average Position of motif in Background48.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGAAATCCCC
GGAAATCCCC
 C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGAAATCCCC
GGAAATTCCC
 C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AGAAATCCCC
GGAAATTCCC
 C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-AGAAATCCCC-
GGGAAATCCCCN
 A C G T C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGAAATCCCC
GGAAANCCCC
 C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MZF1/MA0056.1/Jaspar

Match Rank:6
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AGAAATCCCC-
-----TCCCCA
 C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGAAATCCCC
GGGGGAATCCCC
 A C G T A C G T C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGAAATCCCC---
-SSAATCCACANN
 C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C A C G T A C G T A C G T
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGAAATCCCC-
AGGGGAATCCCCT
 A C G T A C G T C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AGAAATCCCC---
NNNAATTAATCCCCNCN
 A C G T A C G T A C G T A C G T C T G A A T C G G T C A C G T A T G C A A C G T T G A C G T A C G T A C A G T C A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T