Information for 3-TGCATGCATG (Motif 14)

A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G
Reverse Opposite:
A G T C T C G A A C G T A C T G A G T C G T C A G A C T A T C G A T G C C G T A
p-value:1e-4
log p-value:-9.675e+00
Information Content per bp:1.863
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif88.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets41.0 +/- 22.7bp
Average Position of motif in Background50.4 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCATGCATG-----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGCATGCATG
TTGCGTGCVA-
 A C G T A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATG--
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGCATGCATG-----
-ACATTCATGACACG
 A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCATGCATG
TGCGTG----
 A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATG-
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGCATGCATG---
---ATGMATATDC
 A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCATGCATG----
TTCACGCATGAGTT
 A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGCATGCATG---
--AAGGCAAGTGT
 A C G T A T C G A T G C C T G A A C G T A C T G A G T C C G T A A G C T C T A G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T