Information for 5-CATGGAGTATCCA (Motif 9)

A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A
Reverse Opposite:
C G A T C T A G A T C G C G T A A C G T C G T A G T A C A C G T T A G C A T G C C G T A A C G T A C T G
p-value:1e-9
log p-value:-2.128e+01
Information Content per bp:1.928
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 22.8bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CATGGAGTATCCA-
TCATGAATWATTCAT
 A C G T A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CATGGAGTATCCA-
WYATGCATWATGCAT
 A C G T A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CATGGAGTATCCA-
CATTAATTATTCAT
 A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CATGGAGTATCCA-----
-NTNNCGTATCCAAGTNN
 A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

POU4F2/MA0683.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATGGAGTATCCA-
CTCATTAATTATGCAT
 A C G T A C G T A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATGGAGTATCCA-
CTCATTAATTATGCAT
 A C G T A C G T A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CATGGAGTATCCA
-ATGCATAATTCA
 A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PH0165.1_Six6_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CATGGAGTATCCA----
AATAGGGTATCAATTAT
 A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CATGGAGTATCCA
--GGGAATTTCC-
 A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CATGGAGTATCCA---------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A G T C C G T A A C G T A T C G A T C G C G T A A C T G A C G T C G T A A C G T A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T