Information for 4-CCTMATCCCTCMAGAY (Motif 8)

G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
Reverse Opposite:
T C A G A G C T A T G C A C G T A C G T A C T G C G T A C T A G A C T G A T C G C G T A C G A T C A G T C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.133e+01
Information Content per bp:1.745
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.5 +/- 27.6bp
Average Position of motif in Background47.4 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
GCTAATCCCC------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
NYTAATCCYB------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
CCTAATCCGC------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
CTTAATCCC-------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCTMATCCCTCMAGAY
-YTAATCCY-------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
-TTAATCCC-------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
GCTAATCC--------
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTMATCCCTCMAGAY
-GYCATCMATCAT---
 G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTMATCCCTCMAGAY
NTTGTTAATCCCTCTNN--
 A C G T A C G T A C G T G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCTMATCCCTCMAGAY
GANNATTAATCCCTNNN---
 A C G T A C G T A C G T A C G T G T A C G T A C C G A T G T C A C G T A A C G T A T G C G T A C A G T C C G A T A G T C G T C A T C G A A T C G C T G A A G T C
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A A C G T A C G T A C G T