Information for 5-CCATTCAGGA (Motif 19)

G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A
Reverse Opposite:
G C A T T G A C G T A C A G C T T A C G T G C A G T C A C A G T C A T G C T A G
p-value:1e-6
log p-value:-1.605e+01
Information Content per bp:1.652
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif11.07%
Number of Background Sequences with motif2527.1
Percentage of Background Sequences with motif5.25%
Average Position of motif in Targets51.2 +/- 23.4bp
Average Position of motif in Background50.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCATTCAGGA----
ACATTCATGACACG
 G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCATTCAGGA----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CCATTCAGGA
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCATTCAGGA---
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCATTCAGGA
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCATTCAGGA
AGCCACTCAAG-
 A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCATTCAGGA
CCAATCAA--
 G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCATTCAGGA-
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCATTCAGGA---
---ANCAGGATGT
 G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCATTCAGGA
AGCCAATCGG--
 A C G T A C G T G A T C G T A C G T C A C A G T A C G T A T G C T C G A C A T G A C T G C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T