Information for 8-GTGGCGATTC (Motif 25)

A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C
Reverse Opposite:
A C T G C T G A C G T A A C G T A G T C A C T G A G T C A G T C C G T A A T G C
p-value:1e-6
log p-value:-1.570e+01
Information Content per bp:1.868
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets14.2 +/- 10.3bp
Average Position of motif in Background29.9 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTGGCGATTC--
--GGCCATTAAC
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTGGCGATTC--
--GGAAATTCCC
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C A C G T A C G T
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCGATTC
NTTGGCANN--
 A C G T A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTGGCGATTC--
--GGAAATTCCC
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C A C G T A C G T
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTGGCGATTC
TTGGCA----
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTGGCGATTC----
--GGGGATTCCCCC
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTGGCGATTC-
-GGGGATTTCC
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCGATTC
TAATGGCGGNC-
 A C G T A C G T A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTGGCGATTC----
-AGGGGAATCCCCT
 A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCGATTC
CTTGGCAA---
 A C G T A T C G C G A T A C T G A C T G A G T C C T A G C G T A A C G T A G C T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T