Information for 4-TTAAAATTTT (Motif 20)

A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T
Reverse Opposite:
C T G A C T G A T C G A C G T A A C G T A C G T A G C T C G A T T C G A G T C A
p-value:1e-7
log p-value:-1.792e+01
Information Content per bp:1.828
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif140.4
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets39.2 +/- 19.3bp
Average Position of motif in Background53.3 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTAAAATTTT
NNCNNAACAATTNT
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAAATTTT-
NANTATTATAATTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAAATTTT-
NCGTATTATAATCNTA
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTAAAATTTT---
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAAAATTTT
ATTTGAATT--
 A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTAAAATTTT-
NNTAATTATAATTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------TTAAAATTTT-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TTAAAATTTT-
TTTAATTATAATTAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

Arid5a/MA0602.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTAAAATTTT--
NNTNNCAATATTAG
 A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTAAAATTTT--
NNTNNCAATATTAG
 A C G T A C G T A C G T A G C T C G T A T C G A C G T A C G T A A C G T A G C T A G C T A G C T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G