Information for 3-AAGCCAGGKGAAAYTC (Motif 5)

T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
Reverse Opposite:
A C T G C T G A C T A G A G C T A C G T A C G T A G T C G T C A T A G C A T G C A C G T C T A G A T C G A G T C C G A T A G C T
p-value:1e-14
log p-value:-3.302e+01
Information Content per bp:1.719
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.7 +/- 21.3bp
Average Position of motif in Background53.8 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGGKGAAAYTC
TAAGCCACTTGAAATT-
 A C G T T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGGKGAAAYTC
TAAGCCACTTGAATTT-
 A C G T T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGGKGAAAYTC
TAAGCCACTTGAAATT-
 A C G T T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGGKGAAAYTC
ATAACCACTTGAAAATT
 A C G T T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:AAGCCAGGKGAAAYTC--
--------GGAAATTCCC
 T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AAGCCAGGKGAAAYTC
-----AGAGGAA----
 T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAGGKGAAAYTC
TAAGCCACTTAACATT-
 A C G T T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.56
Offset:8
Orientation:forward strand
Alignment:AAGCCAGGKGAAAYTC--
--------GGAAATTCCC
 T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:AAGCCAGGKGAAAYTC--
--------GGAAANCCCC
 T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AAGCCAGGKGAAAYTC
-----AATGGAAAAT-
 T C G A C G T A A C T G A T G C A G T C C G T A T A C G A T C G C A G T A C T G C G T A C G T A T C G A A G T C G A C T A G T C
A C G T A C G T A C G T A C G T A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T