Information for 5-CGAGAGGGCGGCGCGC (Motif 12)

A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
Reverse Opposite:
A C T G A T G C C T A G A G T C A C T G A G T C A G T C A C T G A G T C A G T C G T A C A C G T A G T C A C G T A G T C A T C G
p-value:1e-9
log p-value:-2.093e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.6 +/- 7.9bp
Average Position of motif in Background57.8 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGAGAGGGCGGCGCGC
CAAGATGGCGGC----
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CGAGAGGGCGGCGCGC
--RGKGGGCGGAGC--
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGAGAGGGCGGCGCGC
CAAGATGGCGGC----
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGAGAGGGCGGCGCGC
---GGGGGCGGGGCC-
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
A C G T A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T

SP2/MA0516.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGAGAGGGCGGCGCGC
GGGNGGGGGCGGGGC--
 A C G T A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGAGAGGGCGGCGCGC
GGCGGGGGCGGGGG--
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.60
Offset:9
Orientation:reverse strand
Alignment:CGAGAGGGCGGCGCGC-
---------GGCGCGCT
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGAGAGGGCGGCGCGC
-NNVDGGGYGGGGCYN
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
A C G T T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGAGAGGGCGGCGCGC
--RGKGGGCGKGGC--
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
A C G T A C G T C T A G T C A G C A G T T C A G A C T G A C T G G A T C C T A G A C T G C T A G T C A G A T G C A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CGAGAGGGCGGCGCGC
---GGGGGCGGGGC--
 A T G C C T A G C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A C T G A G T C A C T G A G T C A T C G A G T C
A C G T A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T