Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 793)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48346)	% of Background Sequences with Motif
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.879e+00	1.0000	199.0	25.09%	10128.5	20.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-4.509e+00	1.0000	11.0	1.39%	296.4	0.61%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-4.189e+00	1.0000	40.0	5.04%	1692.3	3.50%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-4.126e+00	1.0000	27.0	3.40%	1049.0	2.17%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-3.910e+00	1.0000	20.0	2.52%	730.4	1.51%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.619e+00	1.0000	4.0	0.50%	68.7	0.14%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.538e+00	1.0000	22.0	2.77%	858.6	1.78%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.494e+00	1.0000	33.0	4.16%	1416.1	2.93%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.354e+00	1.0000	17.0	2.14%	632.8	1.31%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.272e+00	1.0000	29.0	3.66%	1237.1	2.56%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.102e+00	1.0000	39.0	4.92%	1782.7	3.69%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-3.060e+00	1.0000	26.0	3.28%	1108.5	2.29%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.942e+00	1.0000	31.0	3.91%	1382.9	2.86%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.913e+00	1.0000	86.0	10.84%	4407.4	9.12%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.906e+00	1.0000	11.0	1.39%	383.5	0.79%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-2.845e+00	1.0000	10.0	1.26%	341.6	0.71%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.806e+00	1.0000	3.0	0.38%	54.3	0.11%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.774e+00	1.0000	18.0	2.27%	733.3	1.52%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.757e+00	1.0000	1.0	0.13%	4.1	0.01%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-2.719e+00	1.0000	22.0	2.77%	942.7	1.95%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.706e+00	1.0000	5.0	0.63%	132.0	0.27%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.682e+00	1.0000	37.0	4.67%	1739.8	3.60%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.605e+00	1.0000	68.0	8.58%	3465.2	7.17%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.558e+00	1.0000	5.0	0.63%	137.1	0.28%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.508e+00	1.0000	45.0	5.67%	2205.2	4.56%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-2.454e+00	1.0000	12.0	1.51%	465.8	0.96%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-2.443e+00	1.0000	41.0	5.17%	1997.4	4.13%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.413e+00	1.0000	3.0	0.38%	64.8	0.13%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.404e+00	1.0000	10.0	1.26%	372.4	0.77%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.367e+00	1.0000	1.0	0.13%	6.1	0.01%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.298e+00	1.0000	29.0	3.66%	1368.5	2.83%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.267e+00	1.0000	19.0	2.40%	840.1	1.74%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.220e+00	1.0000	8.0	1.01%	290.8	0.60%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.203e+00	1.0000	10.0	1.26%	388.8	0.80%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.168e+00	1.0000	9.0	1.13%	342.9	0.71%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.157e+00	1.0000	15.0	1.89%	645.7	1.34%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.137e+00	1.0000	16.0	2.02%	699.8	1.45%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.114e+00	1.0000	22.0	2.77%	1019.6	2.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.076e+00	1.0000	61.0	7.69%	3196.5	6.61%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.055e+00	1.0000	19.0	2.40%	867.9	1.80%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.054e+00	1.0000	7.0	0.88%	254.9	0.53%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.992e+00	1.0000	125.0	15.76%	6929.7	14.33%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.977e+00	1.0000	17.0	2.14%	771.9	1.60%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.954e+00	1.0000	16.0	2.02%	721.4	1.49%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.935e+00	1.0000	12.0	1.51%	514.7	1.06%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.915e+00	1.0000	81.0	10.21%	4390.3	9.08%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.907e+00	1.0000	92.0	11.60%	5031.2	10.41%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.880e+00	1.0000	8.0	1.01%	316.5	0.65%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.823e+00	1.0000	7.0	0.88%	271.1	0.56%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.812e+00	1.0000	2.0	0.25%	44.4	0.09%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.782e+00	1.0000	179.0	22.57%	10209.0	21.12%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.781e+00	1.0000	5.0	0.63%	177.4	0.37%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.755e+00	1.0000	24.0	3.03%	1184.5	2.45%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.710e+00	1.0000	101.0	12.74%	5626.7	11.64%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.698e+00	1.0000	28.0	3.53%	1417.3	2.93%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.693e+00	1.0000	20.0	2.52%	974.1	2.01%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.650e+00	1.0000	1.0	0.13%	13.6	0.03%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.645e+00	1.0000	5.0	0.63%	186.5	0.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.643e+00	1.0000	8.0	1.01%	337.0	0.70%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.641e+00	1.0000	108.0	13.62%	6064.4	12.54%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.640e+00	1.0000	55.0	6.94%	2969.3	6.14%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.559e+00	1.0000	2.0	0.25%	52.0	0.11%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.546e+00	1.0000	4.0	0.50%	144.7	0.30%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.542e+00	1.0000	15.0	1.89%	723.8	1.50%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.532e+00	1.0000	20.0	2.52%	1001.5	2.07%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.504e+00	1.0000	120.0	15.13%	6831.6	14.13%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.502e+00	1.0000	73.0	9.21%	4060.8	8.40%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.480e+00	1.0000	241.0	30.39%	14081.1	29.13%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.478e+00	1.0000	33.0	4.16%	1747.9	3.62%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.458e+00	1.0000	40.0	5.04%	2154.7	4.46%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.447e+00	1.0000	136.0	17.15%	7808.2	16.15%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.446e+00	1.0000	11.0	1.39%	518.1	1.07%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.431e+00	1.0000	11.0	1.39%	521.0	1.08%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.427e+00	1.0000	16.0	2.02%	796.4	1.65%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.411e+00	1.0000	38.0	4.79%	2051.8	4.24%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.409e+00	1.0000	3.0	0.38%	104.4	0.22%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.377e+00	1.0000	2.0	0.25%	60.0	0.12%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.374e+00	1.0000	80.0	10.09%	4519.5	9.35%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.353e+00	1.0000	2.0	0.25%	60.3	0.12%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.336e+00	1.0000	12.0	1.51%	588.9	1.22%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.332e+00	1.0000	5.0	0.63%	210.9	0.44%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.329e+00	1.0000	7.0	0.88%	316.1	0.65%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.296e+00	1.0000	55.0	6.94%	3076.9	6.36%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.268e+00	1.0000	22.0	2.77%	1165.9	2.41%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.251e+00	1.0000	11.0	1.39%	545.6	1.13%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.236e+00	1.0000	8.0	1.01%	381.5	0.79%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.191e+00	1.0000	10.0	1.26%	498.3	1.03%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.186e+00	1.0000	4.0	0.50%	170.5	0.35%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.137e+00	1.0000	10.0	1.26%	507.0	1.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.118e+00	1.0000	5.0	0.63%	230.0	0.48%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.109e+00	1.0000	5.0	0.63%	231.5	0.48%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.101e+00	1.0000	9.0	1.13%	455.1	0.94%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.099e+00	1.0000	47.0	5.93%	2673.0	5.53%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.094e+00	1.0000	4.0	0.50%	178.5	0.37%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.092e+00	1.0000	16.0	2.02%	857.4	1.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.073e+00	1.0000	16.0	2.02%	862.0	1.78%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.059e+00	1.0000	68.0	8.58%	3937.1	8.14%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.055e+00	1.0000	2.0	0.25%	75.4	0.16%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.042e+00	1.0000	61.0	7.69%	3527.4	7.30%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.041e+00	1.0000	4.0	0.50%	183.2	0.38%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.033e+00	1.0000	85.0	10.72%	4966.5	10.27%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.027e+00	1.0000	1.0	0.13%	27.9	0.06%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.024e+00	1.0000	10.0	1.26%	524.8	1.09%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.022e+00	1.0000	7.0	0.88%	353.4	0.73%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.000e+00	1.0000	19.0	2.40%	1052.1	2.18%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.954e-01	1.0000	17.0	2.14%	936.3	1.94%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-9.868e-01	1.0000	29.0	3.66%	1645.3	3.40%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.829e-01	1.0000	83.0	10.47%	4871.8	10.08%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.753e-01	1.0000	16.0	2.02%	882.6	1.83%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.631e-01	1.0000	6.0	0.76%	304.3	0.63%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.556e-01	1.0000	6.0	0.76%	305.2	0.63%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.543e-01	1.0000	10.0	1.26%	536.5	1.11%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.437e-01	1.0000	2.0	0.25%	82.1	0.17%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.365e-01	1.0000	12.0	1.51%	657.0	1.36%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-9.284e-01	1.0000	65.0	8.20%	3817.6	7.90%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-9.265e-01	1.0000	10.0	1.26%	541.5	1.12%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.257e-01	1.0000	29.0	3.66%	1664.9	3.44%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.233e-01	1.0000	71.0	8.95%	4180.4	8.65%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-9.210e-01	1.0000	10.0	1.26%	542.0	1.12%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.188e-01	1.0000	44.0	5.55%	2562.0	5.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.896e-01	1.0000	28.0	3.53%	1616.4	3.34%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-8.745e-01	1.0000	19.0	2.40%	1084.0	2.24%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.720e-01	1.0000	1.0	0.13%	33.4	0.07%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-8.696e-01	1.0000	8.0	1.01%	434.9	0.90%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-8.665e-01	1.0000	65.0	8.20%	3847.5	7.96%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.523e-01	1.0000	4.0	0.50%	203.7	0.42%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-8.339e-01	1.0000	2.0	0.25%	90.2	0.19%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-8.249e-01	1.0000	90.0	11.35%	5380.5	11.13%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.207e-01	1.0000	28.0	3.53%	1639.4	3.39%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-8.153e-01	1.0000	106.0	13.37%	6355.8	13.15%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.141e-01	1.0000	40.0	5.04%	2364.4	4.89%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.979e-01	1.0000	96.0	12.11%	5760.9	11.92%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.949e-01	1.0000	4.0	0.50%	210.9	0.44%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.874e-01	1.0000	12.0	1.51%	688.0	1.42%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.819e-01	1.0000	7.0	0.88%	390.7	0.81%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.720e-01	1.0000	25.0	3.15%	1475.7	3.05%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.679e-01	1.0000	5.0	0.63%	273.0	0.56%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.646e-01	1.0000	8.0	1.01%	453.8	0.94%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.583e-01	1.0000	73.0	9.21%	4389.0	9.08%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.504e-01	1.0000	26.0	3.28%	1544.0	3.19%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.456e-01	1.0000	21.0	2.65%	1242.9	2.57%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.414e-01	1.0000	4.0	0.50%	217.9	0.45%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.384e-01	1.0000	52.0	6.56%	3125.9	6.47%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.334e-01	1.0000	16.0	2.02%	944.0	1.95%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.035e-01	1.0000	14.0	1.77%	830.5	1.72%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-7.021e-01	1.0000	100.0	12.61%	6067.1	12.55%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.982e-01	1.0000	38.0	4.79%	2293.5	4.74%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.915e-01	1.0000	4.0	0.50%	224.6	0.46%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.798e-01	1.0000	21.0	2.65%	1264.4	2.62%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.755e-01	1.0000	28.0	3.53%	1693.0	3.50%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.479e-01	1.0000	17.0	2.14%	1030.9	2.13%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.458e-01	1.0000	3.0	0.38%	169.7	0.35%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.454e-01	1.0000	44.0	5.55%	2685.4	5.55%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.268e-01	1.0000	7.0	0.88%	420.9	0.87%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.237e-01	1.0000	3.0	0.38%	172.9	0.36%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.206e-01	1.0000	1.0	0.13%	47.1	0.10%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-6.158e-01	1.0000	16.0	2.02%	979.2	2.03%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.954e-01	1.0000	13.0	1.64%	800.5	1.66%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.939e-01	1.0000	45.0	5.67%	2774.4	5.74%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.868e-01	1.0000	45.0	5.67%	2778.5	5.75%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.867e-01	1.0000	23.0	2.90%	1422.8	2.94%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.851e-01	1.0000	12.0	1.51%	741.6	1.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.800e-01	1.0000	8.0	1.01%	493.9	1.02%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-5.735e-01	1.0000	67.0	8.45%	4139.2	8.56%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.725e-01	1.0000	87.0	10.97%	5368.9	11.11%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.706e-01	1.0000	11.0	1.39%	683.8	1.41%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.691e-01	1.0000	6.0	0.76%	370.5	0.77%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.689e-01	1.0000	10.0	1.26%	621.7	1.29%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.675e-01	1.0000	31.0	3.91%	1925.3	3.98%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.643e-01	1.0000	34.0	4.29%	2112.2	4.37%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.561e-01	1.0000	8.0	1.01%	499.5	1.03%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.451e-01	1.0000	33.0	4.16%	2060.2	4.26%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.420e-01	1.0000	65.0	8.20%	4038.7	8.35%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.406e-01	1.0000	8.0	1.01%	503.6	1.04%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.311e-01	1.0000	42.0	5.30%	2625.9	5.43%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.285e-01	1.0000	70.0	8.83%	4356.5	9.01%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.275e-01	1.0000	7.0	0.88%	443.2	0.92%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.261e-01	1.0000	41.0	5.17%	2566.3	5.31%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.244e-01	1.0000	12.0	1.51%	760.0	1.57%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.231e-01	1.0000	15.0	1.89%	949.7	1.96%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.179e-01	1.0000	3.0	0.38%	188.1	0.39%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.051e-01	1.0000	19.0	2.40%	1207.8	2.50%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.978e-01	1.0000	2.0	0.25%	126.0	0.26%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.965e-01	1.0000	7.0	0.88%	452.0	0.93%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.961e-01	1.0000	14.0	1.77%	896.1	1.85%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-4.873e-01	1.0000	13.0	1.64%	837.0	1.73%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.731e-01	1.0000	10.0	1.26%	650.7	1.35%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.662e-01	1.0000	19.0	2.40%	1224.4	2.53%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.646e-01	1.0000	52.0	6.56%	3289.6	6.80%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.604e-01	1.0000	22.0	2.77%	1416.9	2.93%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-4.600e-01	1.0000	20.0	2.52%	1290.7	2.67%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.579e-01	1.0000	1.0	0.13%	61.3	0.13%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.552e-01	1.0000	10.0	1.26%	656.7	1.36%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.505e-01	1.0000	2.0	0.25%	132.2	0.27%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.492e-01	1.0000	70.0	8.83%	4419.6	9.14%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.429e-01	1.0000	131.0	16.52%	8196.9	16.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.306e-01	1.0000	6.0	0.76%	404.1	0.84%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.304e-01	1.0000	1.0	0.13%	64.1	0.13%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.304e-01	1.0000	1.0	0.13%	64.8	0.13%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.242e-01	1.0000	9.0	1.13%	602.2	1.25%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.227e-01	1.0000	7.0	0.88%	472.5	0.98%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.208e-01	1.0000	15.0	1.89%	990.8	2.05%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.164e-01	1.0000	43.0	5.42%	2762.2	5.71%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-4.138e-01	1.0000	2.0	0.25%	138.1	0.29%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.105e-01	1.0000	110.0	13.87%	6935.1	14.35%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.063e-01	1.0000	6.0	0.76%	411.4	0.85%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.044e-01	1.0000	24.0	3.03%	1572.6	3.25%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.977e-01	1.0000	19.0	2.40%	1257.7	2.60%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.976e-01	1.0000	17.0	2.14%	1129.0	2.34%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.967e-01	1.0000	3.0	0.38%	211.3	0.44%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.966e-01	1.0000	115.0	14.50%	7261.0	15.02%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-3.949e-01	1.0000	64.0	8.07%	4093.8	8.47%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.939e-01	1.0000	39.0	4.92%	2527.3	5.23%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.929e-01	1.0000	32.0	4.04%	2086.3	4.32%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.908e-01	1.0000	100.0	12.61%	6337.3	13.11%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.822e-01	1.0000	67.0	8.45%	4292.2	8.88%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.817e-01	1.0000	43.0	5.42%	2788.6	5.77%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.804e-01	1.0000	27.0	3.40%	1777.5	3.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.717e-01	1.0000	8.0	1.01%	555.6	1.15%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.706e-01	1.0000	16.0	2.02%	1078.5	2.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.697e-01	1.0000	2.0	0.25%	146.9	0.30%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.697e-01	1.0000	2.0	0.25%	146.9	0.30%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.663e-01	1.0000	1.0	0.13%	72.2	0.15%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.635e-01	1.0000	26.0	3.28%	1724.4	3.57%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.632e-01	1.0000	14.0	1.77%	952.4	1.97%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.592e-01	1.0000	15.0	1.89%	1019.3	2.11%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.547e-01	1.0000	10.0	1.26%	695.0	1.44%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.516e-01	1.0000	19.0	2.40%	1282.8	2.65%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.493e-01	1.0000	15.0	1.89%	1024.9	2.12%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.473e-01	1.0000	17.0	2.14%	1155.8	2.39%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.424e-01	1.0000	4.0	0.50%	294.7	0.61%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.410e-01	1.0000	11.0	1.39%	766.2	1.58%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.320e-01	1.0000	1.0	0.13%	77.3	0.16%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.253e-01	1.0000	47.0	5.93%	3088.4	6.39%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.223e-01	1.0000	13.0	1.64%	907.6	1.88%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.183e-01	1.0000	3.0	0.38%	231.0	0.48%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.182e-01	1.0000	14.0	1.77%	975.4	2.02%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.182e-01	1.0000	14.0	1.77%	975.9	2.02%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.126e-01	1.0000	2.0	0.25%	158.6	0.33%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.103e-01	1.0000	34.0	4.29%	2275.0	4.71%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.085e-01	1.0000	12.0	1.51%	848.7	1.76%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.061e-01	1.0000	4.0	0.50%	305.2	0.63%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.012e-01	1.0000	5.0	0.63%	377.4	0.78%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.004e-01	1.0000	3.0	0.38%	235.6	0.49%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.998e-01	1.0000	6.0	0.76%	447.8	0.93%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.969e-01	1.0000	3.0	0.38%	236.1	0.49%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.901e-01	1.0000	3.0	0.38%	238.1	0.49%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.894e-01	1.0000	40.0	5.04%	2676.4	5.54%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.868e-01	1.0000	57.0	7.19%	3760.3	7.78%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.793e-01	1.0000	1.0	0.13%	86.9	0.18%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.784e-01	1.0000	19.0	2.40%	1328.8	2.75%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.685e-01	1.0000	10.0	1.26%	735.6	1.52%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.674e-01	1.0000	131.0	16.52%	8430.9	17.44%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.606e-01	1.0000	59.0	7.44%	3917.6	8.10%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.582e-01	1.0000	3.0	0.38%	248.9	0.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.571e-01	1.0000	4.0	0.50%	323.0	0.67%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.567e-01	1.0000	24.0	3.03%	1672.9	3.46%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.522e-01	1.0000	20.0	2.52%	1413.1	2.92%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.496e-01	1.0000	8.0	1.01%	608.7	1.26%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.457e-01	1.0000	86.0	10.84%	5645.1	11.68%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.451e-01	1.0000	78.0	9.84%	5141.9	10.64%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.416e-01	1.0000	4.0	0.50%	328.9	0.68%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.407e-01	1.0000	12.0	1.51%	887.8	1.84%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.405e-01	1.0000	17.0	2.14%	1223.2	2.53%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.392e-01	1.0000	12.0	1.51%	888.8	1.84%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.345e-01	1.0000	24.0	3.03%	1691.3	3.50%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.312e-01	1.0000	11.0	1.39%	825.0	1.71%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.262e-01	1.0000	63.0	7.94%	4216.4	8.72%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.241e-01	1.0000	2.0	0.25%	182.9	0.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.220e-01	1.0000	11.0	1.39%	831.2	1.72%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.218e-01	1.0000	3.0	0.38%	261.9	0.54%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.192e-01	1.0000	3.0	0.38%	262.6	0.54%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.141e-01	1.0000	3.0	0.38%	264.7	0.55%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.113e-01	1.0000	49.0	6.18%	3340.8	6.91%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.048e-01	1.0000	137.0	17.28%	8919.6	18.45%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.037e-01	1.0000	1.0	0.13%	103.6	0.21%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.012e-01	1.0000	13.0	1.64%	983.5	2.03%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.822e-01	1.0000	2.0	0.25%	197.2	0.41%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.773e-01	1.0000	9.0	1.13%	724.0	1.50%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.724e-01	1.0000	14.0	1.77%	1077.0	2.23%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.700e-01	1.0000	1.0	0.13%	113.7	0.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.673e-01	1.0000	3.0	0.38%	285.2	0.59%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.670e-01	1.0000	1.0	0.13%	114.4	0.24%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.589e-01	1.0000	4.0	0.50%	368.0	0.76%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.522e-01	1.0000	31.0	3.91%	2246.3	4.65%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.520e-01	1.0000	5.0	0.63%	449.1	0.93%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.489e-01	1.0000	12.0	1.51%	959.3	1.98%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.483e-01	1.0000	17.0	2.14%	1307.8	2.71%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.476e-01	1.0000	5.0	0.63%	452.9	0.94%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.389e-01	1.0000	6.0	0.76%	534.5	1.11%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.374e-01	1.0000	1.0	0.13%	125.8	0.26%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.370e-01	1.0000	36.0	4.54%	2601.6	5.38%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.366e-01	1.0000	10.0	1.26%	829.3	1.72%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.261e-01	1.0000	25.0	3.15%	1882.0	3.89%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.244e-01	1.0000	54.0	6.81%	3808.5	7.88%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.236e-01	1.0000	1.0	0.13%	131.4	0.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.210e-01	1.0000	16.0	2.02%	1271.2	2.63%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.203e-01	1.0000	9.0	1.13%	773.7	1.60%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.051e-01	1.0000	3.0	0.38%	324.2	0.67%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.045e-01	1.0000	28.0	3.53%	2122.1	4.39%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.043e-01	1.0000	49.0	6.18%	3525.1	7.29%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.520e-02	1.0000	27.0	3.40%	2072.5	4.29%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-9.249e-02	1.0000	43.0	5.42%	3156.8	6.53%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.208e-02	1.0000	18.0	2.27%	1455.1	3.01%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-9.082e-02	1.0000	8.0	1.01%	733.4	1.52%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.880e-02	1.0000	4.0	0.50%	422.2	0.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.919e-02	1.0000	48.0	6.05%	3525.3	7.29%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.864e-02	1.0000	5.0	0.63%	515.2	1.07%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.319e-02	1.0000	2.0	0.25%	263.2	0.54%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.024e-02	1.0000	5.0	0.63%	526.5	1.09%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.545e-02	1.0000	40.0	5.04%	3031.5	6.27%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-6.422e-02	1.0000	25.0	3.15%	2006.5	4.15%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.002e-02	1.0000	1.0	0.13%	173.9	0.36%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.777e-02	1.0000	2.0	0.25%	280.9	0.58%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.680e-02	1.0000	8.0	1.01%	787.9	1.63%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-5.377e-02	1.0000	21.0	2.65%	1754.0	3.63%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.095e-02	1.0000	2.0	0.25%	289.6	0.60%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-5.079e-02	1.0000	15.0	1.89%	1329.0	2.75%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.926e-02	1.0000	37.0	4.67%	2885.5	5.97%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.865e-02	1.0000	6.0	0.76%	644.6	1.33%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.750e-02	1.0000	2.0	0.25%	294.7	0.61%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.406e-02	1.0000	9.0	1.13%	894.2	1.85%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.366e-02	1.0000	13.0	1.64%	1201.7	2.49%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.339e-02	1.0000	7.0	0.88%	737.7	1.53%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-4.171e-02	1.0000	22.0	2.77%	1866.5	3.86%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.138e-02	1.0000	13.0	1.64%	1208.9	2.50%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.612e-02	1.0000	15.0	1.89%	1376.0	2.85%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.500e-02	1.0000	1.0	0.13%	205.3	0.42%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.413e-02	1.0000	42.0	5.30%	3301.6	6.83%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.237e-02	1.0000	31.0	3.91%	2547.9	5.27%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.931e-02	1.0000	42.0	5.30%	3331.1	6.89%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.756e-02	1.0000	23.0	2.90%	2003.5	4.14%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.634e-02	1.0000	30.0	3.78%	2512.4	5.20%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.939e-02	1.0000	5.0	0.63%	646.2	1.34%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.384e-02	1.0000	18.0	2.27%	1731.5	3.58%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.286e-02	1.0000	9.0	1.13%	1029.2	2.13%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.202e-02	1.0000	9.0	1.13%	1036.1	2.14%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.103e-02	1.0000	4.0	0.50%	602.3	1.25%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-7.186e-03	1.0000	5.0	0.63%	733.2	1.52%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.863e-03	1.0000	94.0	11.85%	7201.9	14.90%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.698e-03	1.0000	11.0	1.39%	1406.3	2.91%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	20.7	0.04%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	0.0	0.00%	69.4	0.14%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	29.5	0.06%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	0.000e+00	1.0000	0.0	0.00%	197.3	0.41%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	0.000e+00	1.0000	0.0	0.00%	180.2	0.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	174.9	0.36%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	32.3	0.07%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	55.2	0.11%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	76.5	0.16%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	44.5	0.09%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	77.9	0.16%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	34.4	0.07%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	4.5	0.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	13.8	0.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	57.9	0.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	0.000e+00	1.0000	0.0	0.00%	248.1	0.51%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	233.0	0.48%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.6	0.02%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	0.000e+00	1.0000	0.0	0.00%	198.0	0.41%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	23.9	0.05%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	29.4	0.06%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	28.8	0.06%