Information for 11-GTAGTAGGCA (Motif 27)

A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C A C G T C G T A A G T C A C G T C G T A A G T C
p-value:1e-5
log p-value:-1.207e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 28.1bp
Average Position of motif in Background59.4 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTAGTAGGCA-
--GGTTGGCAT
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTAGTAGGCA--
--NNTTGGCANN
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTAGTAGGCA-
--NGTGGGCAT
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTAGTAGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTAGTAGGCA--
---NTTGGCANN
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTAGTAGGCA-----
----AAGGCAAGTGT
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------GTAGTAGGCA
NNNTTAGGTAGCNTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GTAGTAGGCA-
---CTTGGCAA
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GTAGTAGGCA
----TTGGCA
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTAGTAGGCA---
-NDGTAAACARRN
 A C T G A C G T C G T A A C T G A C G T C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G C A T C T A G T C A G A C G T C G T A C G T A C G T A A G T C C G T A T C A G T C A G C T G A