Information for 14-ATGATCGATAGTV (Motif 22)

G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
Reverse Opposite:
A C G T C T G A A G T C A G C T C G T A C G A T G T A C A T C G C G T A A C G T A G T C G T C A A C G T
p-value:1e-6
log p-value:-1.572e+01
Information Content per bp:1.774
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.7 +/- 28.8bp
Average Position of motif in Background59.0 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:ATGATCGATAGTV
ATGATKGATGRC-
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:ATGATCGATAGTV
-DGATCRATAN--
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATGATCGATAGTV
-TAATCGATAA--
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATGATCGATAGTV
-TAATCGATAA--
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATGATCGATAGTV
-TGATTTATGGC-
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATGATCGATAGTV
-TGATTGATGA--
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-ATGATCGATAGTV
TTTGATTGATGN--
 A C G T G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGATCGATAGTV
-TGATTRATGGCY
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATGATCGATAGTV
-TGATTTATGGCC
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATGATCGATAGTV
-TGATTTATGGCC
 G T C A A C G T A C T G C G T A A C G T A T G C A C T G C G T A A C G T C T G A C T A G A G C T T C G A
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C