Information for 4-GCGAAKCGTG (Motif 18)

A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G
Reverse Opposite:
A G T C C T G A A G T C A C T G G T C A A C G T C G A T A G T C A T C G A G T C
p-value:1e-7
log p-value:-1.647e+01
Information Content per bp:1.789
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 21.1bp
Average Position of motif in Background33.9 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes1/MA1099.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCGAAKCGTG--
--NNCGCGTGNN
 A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T A C G T
A C G T A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCGAAKCGTG
----TGCGTG
 A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCGAAKCGTG---
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX5/MA0014.2/Jaspar

Match Rank:4
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GCGAAKCGTG--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Hes2/MA0616.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCGAAKCGTG-
TAACGACACGTGC
 A C G T A C G T A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCGAAKCGTG---
---TTGCGTGCVA
 A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCGAAKCGTG-
---RTACGTGC
 A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T
A C G T A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCGAAKCGTG-
---GGACGTGC
 A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T
A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

Arnt/MA0004.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCGAAKCGTG
----CACGTG
 A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G
A C G T A C G T A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCGAAKCGTG--
NNGCNCTGCGCGGC
 A C G T A C G T A C T G A T G C T A C G C G T A G T C A A C G T A G T C A C T G A G C T C T A G A C G T A C G T
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C