Information for 7-GCCAATAGAGAGATAG (Motif 17)

A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
Reverse Opposite:
A G T C A G C T C T G A A C G T A G T C C G A T A G T C C G A T A G T C A C G T C G T A A C G T A C G T A T C G A T C G G T A C
p-value:1e-7
log p-value:-1.688e+01
Information Content per bp:1.893
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.7 +/- 26.3bp
Average Position of motif in Background48.9 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCAATAGAGAGATAG
AGCCAATCGG-------
 A C G T A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCCAATAGAGAGATAG
-CTAATATTGCTAAA-
 A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCCAATAGAGAGATAG
-CTAATATTGCTAAA-
 A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCCAATAGAGAGATAG
-CCAATAAAAA-----
 A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GCCAATAGAGAGATAG
----ATGGGGTGAT--
 A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
A C G T A C G T A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATAGAGAGATAG
TGCCAA-----------
 A C G T A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCCAATAGAGAGATAG-
--AGATGKDGAGATAAG
 A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G A C G T
A C G T A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATAGAGAGATAG
TGCCAAAATAAACANN-
 A C G T A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GCCAATAGAGAGATAG-
AAACATAATGAGGTTGC
 A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GCCAATAGAGAGATAG
CGTGCCAAG----------
 A C G T A C G T A C G T A C T G A T G C A T G C C G T A C G T A A C G T C G T A A C T G C G T A A C T G C G T A A C T G C G T A A G C T C T G A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T