Information for 11-GTCTGTCTGTCTG (Motif 15)

A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G
Reverse Opposite:
A T G C C G T A C T A G T C G A T A G C C G T A A T C G T G C A G T A C C G T A A T C G C T G A A T G C
p-value:1e-8
log p-value:-1.898e+01
Information Content per bp:1.772
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif168.1
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets54.6 +/- 29.4bp
Average Position of motif in Background51.6 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCTGTCTGTCTG
VBSYGTCTGG---
 A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTCTGTCTGTCTG
--CTGTCTGG---
 A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GTCTGTCTGTCTG--
--CTGTCTGTCACCT
 A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGTCTGTCTG-
GGNGCGNCTGTTNNN
 A C G T A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTCTGTCTGTCTG--
---TGTCTGDCACCT
 A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTCTGTCTGTCTG
--TWGTCTGV---
 A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTCTGTCTGTCTG--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GTCTGTCTGTCTG
ANTCCTTTGTCTNNNN-
 A C G T A C G T A C G T A C G T A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GTCTGTCTGTCTG-
NNGCGTGTGTGCNGCN
 A C G T A C G T A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTCTGTCTGTCTG
GSCTGTCACTCA-
 A T C G A G C T T A G C A C G T A C T G A C G T A T G C A C G T A C T G A G C T G A T C G C A T A T C G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T