Information for 6-CYSTAGCCWMGCG (Motif 9)

A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G
Reverse Opposite:
A G T C A C T G A G T C A C T G C G T A A C T G A C T G A G T C A C G T G T C A A T C G C T A G A C T G
p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.877
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets68.2 +/- 19.8bp
Average Position of motif in Background76.3 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CYSTAGCCWMGCG
ATGTACAGTAGCAAAG--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CYSTAGCCWMGCG----
---GTGCCACGCGACTG
 A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CYSTAGCCWMGCG
--BCAGACWA---
 A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CYSTAGCCWMGCG--
-----GGCACGCGTC
 A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CYSTAGCCWMGCG
ATTTACAGTAGCAAAA--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T

SP4/MA0685.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CYSTAGCCWMGCG------
--TAAGCCACGCCCCCTTT
 A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G C T A C T G A C T A G G T A C A G T C T G C A G T A C A C T G T A G C T G A C A G T C G T A C G A T C G C A T G A C T G A C T

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CYSTAGCCWMGCG-----
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CYSTAGCCWMGCG-
NNNGTAACTANGNNA
 A C G T A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

POL001.1_MTE/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CYSTAGCCWMGCG-----
TTTCGAGCGGAACGGTCGC
 A C G T A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

Tcfl5/MA0632.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CYSTAGCCWMGCG--
-----GGCACGTGCC
 A G T C A G T C A T G C A C G T C G T A A C T G A G T C A G T C C G A T G T A C A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C