Information for 1-CTCMMGMTGCRGG (Motif 2)

A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G
Reverse Opposite:
A G T C A G T C G A C T A C T G G T A C C T G A A C T G A G T C A C T G A C T G A T C G C G T A A C T G
p-value:1e-14
log p-value:-3.276e+01
Information Content per bp:1.788
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif50.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets32.1 +/- 22.6bp
Average Position of motif in Background50.3 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CTCMMGMTGCRGG--
-----TATGCGGGTA
 A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTCMMGMTGCRGG-----
--NNNNATGCGGGTNNNN
 A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

GCM1/MA0646.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTCMMGMTGCRGG---
-----CATGCGGGTAC
 A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTCMMGMTGCRGG-
TCNCCTGCTGNGNNN
 A C G T A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTCMMGMTGCRGG
GGCCYCCTGCTGDGH-
 A C G T A C G T A C G T A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCMMGMTGCRGG-
TNTCCTGCTGTGNNG
 A C G T A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CTCMMGMTGCRGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTCMMGMTGCRGG
-TCCAGATGTT--
 A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G
A C G T A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTCMMGMTGCRGG
CCCCCTGCTGTG--
 A C G T A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CTCMMGMTGCRGG---
-------TNNGGGCAG
 A G T C A C G T A T G C T G A C T G A C A C T G G T A C A G C T A C T G G T A C C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G