Information for 7-CCAAGGATTTGAA (Motif 9)

A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A
Reverse Opposite:
A C G T G C A T G T A C G C T A G C T A C T G A A C G T A T G C G A T C G A C T A C G T A C T G C T A G
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.838
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 27.8bp
Average Position of motif in Background62.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCAAGGATTTGAA
--AAGGATATNTN
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Gfi1/MA0038.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCAAGGATTTGAA
-CNGTGATTTN--
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A
A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:forward strand
Alignment:CCAAGGATTTGAA--
------ATTTGAATT
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CCAAGGATTTGAA----
-------TTTGAAACCG
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAAGGATTTGAA
GCAGTGATTT---
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGGATTTGAA-
CTACTAGGATGTNNTN
 A C G T A C G T A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCAAGGATTTGAA
TGCTGTGATTT---
 A C G T A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAAGGATTTGAA--
---CGGAAGTGAAAC
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCAAGGATTTGAA---
----GGAAGTGAAAST
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCAAGGATTTGAA
--VRGGATTARN-
 A G T C A G T C C G T A C T G A C T A G A T C G G T C A A G C T C G A T C G A T A C T G C G T A C G T A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T