Information for 3-TTTTGCTGTGACT (Motif 4)

A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
Reverse Opposite:
C G T A C T A G G A C T A T G C G T C A G A T C C T G A T A C G A T G C G T C A T C G A T C G A C T G A
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.673
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif284.3
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets50.5 +/- 29.2bp
Average Position of motif in Background51.7 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTGCTGTGACT-
GTNTTGTTGTGANNT
 A C G T A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTTTGCTGTGACT
--RTCATGTGAC-
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
A C G T A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGCTGTGACT
NNTCCTGCTGTGNNN
 A C G T A C G T A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TTTTGCTGTGACT
-----NCGTGACN
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTTTGCTGTGACT
--ATGGGGTGAT-
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTTTGCTGTGACT-
--GTGGCGTGACNG
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T A C G T
A C G T A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTTTGCTGTGACT-
---TGCTGTGATTT
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T A C G T
A C G T A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTTTGCTGTGACT
----GCTGTG---
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTTTGCTGTGACT
--ATGGGGTGAT-
 A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGCTGTGACT
CCCCCTGCTGTG---
 A C G T A C G T A G C T A G C T A G C T A C G T T A C G A G T C A G C T C A T G A C G T A T C G C G T A A G T C G C A T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T