Information for 5-TCGTCGTCAA (Motif 16)

C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G G T C A A T G C A C T G C G T A A T G C A C T G G C T A
p-value:1e-8
log p-value:-1.920e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.3 +/- 18.8bp
Average Position of motif in Background56.6 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCGTCGTCAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXD11/MA0908.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TCGTCGTCAA--
--GTCGTAAAAA
 C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0076.1_Hoxd11/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCGTCGTCAA-----
TAAGGTCGTAAAATCCT
 A C G T A C G T C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCGTCGTCAA----
TAAAGTCGTAAAACGT
 A C G T A C G T C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCGTCGTCAA----
TAAAGTCGTAAAATAG
 A C G T A C G T C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCGTCGTCAA--
-GGTCGTAAAAT
 C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCGTCGTCAA---
-GGTCGTAAAATT
 C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCGTCGTCAA--
--GTCGTAAAAT
 C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCGTCGTCAA-----
TTAGGTCGTAAAATTTC
 A C G T A C G T C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCGTCGTCAA--
-AGTCGTAAAAA
 C A G T A G T C A T C G A C G T A G T C A T C G A C G T A G T C C G T A C T G A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A