Information for 3-GAGCAGCAAC (Motif 13)

A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C
Reverse Opposite:
A C T G G A C T A G C T A C T G A G T C C G A T A C T G A G T C G A C T T A G C
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.650
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif13.38%
Number of Background Sequences with motif3679.7
Percentage of Background Sequences with motif7.49%
Average Position of motif in Targets50.6 +/- 26.1bp
Average Position of motif in Background50.2 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GAGCAGCAAC-
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C G T A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAGCAAC
GGGAGGACNG--
 A C G T A C G T A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGCAGCAAC-
-AGCAGCTGCT
 A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C A C G T
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGCAGCAAC
CAGCC-----
 A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCAAC
TGGAACAGMA--
 A C G T A C G T A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAGCAAC
CGGAGC------
 A C G T A C G T A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCAAC---
CCGCATAGCAACGGA
 A C G T A C G T A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGCAGCAAC-
-ANCAGGATGT
 A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C A C G T
A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGCAGCAAC---
-AGCAGCTGCTNN
 A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C A C G T A C G T A C G T
A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GAGCAGCAAC----
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A T C G C T G A T C A G T G A C G C T A T C A G T G A C T C G A C T G A T G A C A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G