Information for 3-AGCGCCACCTGCTGGS (Motif 3)

G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
Reverse Opposite:
A T C G A T G C A G T C C T G A A T C G A T G C C G T A A C T G A T C G A C G T C T A G A T C G T G A C A C T G A T G C C A G T
p-value:1e-12
log p-value:-2.957e+01
Information Content per bp:1.760
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif15.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.5 +/- 23.1bp
Average Position of motif in Background40.2 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----AGCGCCACCTGCTGGS
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-AGCGCCACCTGCTGGS--
TAGCGCCCCCTGGTGGCCA
 A C G T G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.76
Offset:2
Orientation:forward strand
Alignment:AGCGCCACCTGCTGGS
--SNGCACCTGCHS--
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGCGCCACCTGCTGGS--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:AGCGCCACCTGCTGGS
---NNCACCTGNN---
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:6
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AGCGCCACCTGCTGGS
----NCACCTGTN---
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AGCGCCACCTGCTGGS-
--GGCCYCCTGCTGDGH
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AGCGCCACCTGCTGGS
----CCCCCTGCTGTG
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

TCF3/MA0522.2/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGCGCCACCTGCTGGS
---AACACCTGCT---
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
A C G T A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGCGCCACCTGCTGGS
---CGCACCTGCT---
 G T C A A T C G A G T C A C T G A T G C A G T C C G T A A T G C G T A C A C G T A T C G A T G C G A C T A C T G A T C G T A G C
A C G T A C G T A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T